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ingenuity variant analysis plugin iva  (Qiagen)


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    Qiagen ingenuity variant analysis plugin iva
    Ingenuity Variant Analysis Plugin Iva, supplied by Qiagen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ingenuity+variant+analysis+plugin/ingenuity+variant+analysis+plugin/pm40002721-222-24-29
    Average 90 stars, based on 1 article reviews
    ingenuity variant analysis plugin iva - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Variant Assay:

    Article Title: Cell-Free DNA Variant Sequencing Using CTC-Depleted Blood for Comprehensive Liquid Biopsy Testing in Metastatic Breast Cancer
    Article Snippet: .. The QIAGEN Biomedical Genomics Workbench and the Ingenuity Variant Analysis plugin (IVA; QIAGEN) were used for further annotation, scoring, filtering (described previously [ ]), and interpretation of variants detected in the UMI-based analysis. ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [55] as a variant of likely pathogenic (Additional file 3): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p-value 1.230 × 10−5 (highly conserved) (Additional file 3). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: .. Additional file 2: Detailed data on the analyzed variant NM_001166118.3: c.444_446delGTT detected WES and analyzed using Ingenuity Variant Analysis plugin (QIAGEN, CA, USA). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency
    Article Snippet: .. In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [ ] as a variant of likely pathogenic (Additional file ): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p -value 1.230 × 10 −5 (highly conserved) (Additional file ).

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: .. In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [55] as a variant of likely pathogenic (Additional file 3): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p-value 1.230 × 10−5 (highly conserved) (Additional file 3).

    Article Title: Identification of a Novel Mutation of β-Spectrin in Hereditary Spherocytosis Using Whole Exome Sequencing
    Article Snippet: .. The following functional consequences due to the p.C183Y mutation using the Ingenuity Variant Analysis plugin (IVA; QIAGEN, CA, USA) were predicted: SIFT Function Prediction—Damaging; SIFT Score—0.00; CADD Score—29.500; and Conservation phyloP p -value—5.284E-10 ( ). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [ ] as a variant of likely pathogenic (Additional file ): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p -value 1.230 × 10 −5 (highly conserved) (Additional file ). ..

    Functional Assay:

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [55] as a variant of likely pathogenic (Additional file 3): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p-value 1.230 × 10−5 (highly conserved) (Additional file 3). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency
    Article Snippet: .. In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [ ] as a variant of likely pathogenic (Additional file ): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p -value 1.230 × 10 −5 (highly conserved) (Additional file ).

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: .. In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [55] as a variant of likely pathogenic (Additional file 3): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p-value 1.230 × 10−5 (highly conserved) (Additional file 3).

    Article Title: Identification of a Novel Mutation of β-Spectrin in Hereditary Spherocytosis Using Whole Exome Sequencing
    Article Snippet: .. The following functional consequences due to the p.C183Y mutation using the Ingenuity Variant Analysis plugin (IVA; QIAGEN, CA, USA) were predicted: SIFT Function Prediction—Damaging; SIFT Score—0.00; CADD Score—29.500; and Conservation phyloP p -value—5.284E-10 ( ). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [ ] as a variant of likely pathogenic (Additional file ): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p -value 1.230 × 10 −5 (highly conserved) (Additional file ). ..

    Mutagenesis:

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5'-nucleotidase deficiency.
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [55] as a variant of likely pathogenic (Additional file 3): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p-value 1.230 × 10−5 (highly conserved) (Additional file 3). ..

    Article Title: Identification of a Novel Mutation of β-Spectrin in Hereditary Spherocytosis Using Whole Exome Sequencing
    Article Snippet: .. The following functional consequences due to the p.C183Y mutation using the Ingenuity Variant Analysis plugin (IVA; QIAGEN, CA, USA) were predicted: SIFT Function Prediction—Damaging; SIFT Score—0.00; CADD Score—29.500; and Conservation phyloP p -value—5.284E-10 ( ). ..

    Article Title: A rare mutation (p.F149del) of the NT5C3A gene is associated with pyrimidine 5′-nucleotidase deficiency
    Article Snippet: In-frame deletion (p.F149del, rs12278599) discovered through WES was automatically classified by using Ingenuity Variant Analysis plugin results (QIAGEN, CA, USA) based on the American College of Medical Genetics and Genomics and the Association for Molecular Pathology Guidelines [ ] as a variant of likely pathogenic (Additional file ): “Criteria for classifying p.F149 del as likely pathogenic variants: PM1: Located in a critical and well-established functional domain (UMPH-1) without benign variation (Moderate): PM2: Absent from controls (or at extremely low frequency if recessive) in GnomAD (the Genome Aggregation Database), in these sources of population frequency data, this variant frequency falls below 1% for this recessive phenotype (Moderate); PM4: Protein length change as a result of an in-frame deletion/insertion in a non-repeat region (Moderate). .. Evidence against pathogenicity: none.” The following functional consequences due to the p.F149del mutation using the Ingenuity Variant Analysis plugin (QIAGEN, CA, USA) were predicted: CADD score 18.490 (likely deleterious) and conservation phyloP p -value 1.230 × 10 −5 (highly conserved) (Additional file ). ..



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